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The team arrive on Octasar where a Dr. Carrie Mason of the SGC is working with a local scientist, Dr. Bri’sal, who is working on a project of universal telepathy as part of a scientific conference and believes the Tlak’khan can help him – they’re playing him, naturally, since Bri’sal’s fellow scientists don’t support his project. Stacey overhears them while the rest of the team convinces Mason they’re not traitors. Mason doesn’t believe them and when the project succeeds the Tlak’khan take control. The team launches an attack but the mind-controlled scientists are forced to attack them, but Mason grabs Da’kyll’s device, freeing everyone and forcing the Tlak’khan to retreat.

SG-1 attempts to save a planet’s inhabitants from Nirrti’s genetic experimentation, but find themselves to be her next victims.

Kate helps Jack to locate and identify Syed Ali.

Palmer places Stanton under arrest, but he won’t break. Palmer realizes he must go to extremes to make Stanton talk.

Kim hits her low point of the day when she encounters a cougar in the woods.

The gang find a mysterious ship emitting dangerous energy on an uninhabited planet. While Harrison and Seattle look for the owners the others break into the ship, much to Stacey’s concern. Gus insists on using the ship to return to nearby Earth, unaware that it’s actually a Tlak’khan trap – the ship takes them to Ga’Harn, the Tlak’khan homeworld. Da’kyll captures them all and holds them back from the Nax’kan Council by claiming Warrior Right of Capture. Hah’lak sends his own operative, Gal’korn, to free first Gus and then the rest of the SG team and they see through the deception. They get their vehicles and weapons and get to the nearest Stargate to make their escape.

Colonel O’Neill is trapped on an alien planet with Maybourne, and must fight to stay alive as his companion becomes increasingly paranoid.

The team arrives on a civilized high-tech planet, Rokari, where they determine a comet is heading for the world they’re on with only 60 hours to spare. The local government, the Commonality, don’t believe their warning and state they have outgrown written and recorded language. The team break out a member of an underground resistance that distributes writing and leads them to a hidden library with info on how to use the planet’s defense system. Harrison manages to figure out the language and the team activates the defense system, the Commonality sees the value of writing and everything turns out well.

Colonel O’Neill is charged with the murder of Senator Kinsey, and the rest of the team must uncover a conspiracy in order to clear his name.

Two traitors are uncovered. One is the mole in the Palmer administration who is working with Stanton. The other is the member of the Warner family who helped Syed Ali to bring the bomb into the country.

Jack learns of Ali’s location and tries to rescue Kate.

Kim and Miguel hatch an escape plan to stay out of LA, but the results are disastrous.

The team arrives on an ice planet and intervenes in a fight between the Tlak’khan and the native Ursons. They win the day for the natives but begin to suspect all isn’t as it seems. Seattle follows a young Tlak’khan to a hidden city while Gus interrogates the prisoners who it turns out are farmer/refugees. The team realizes the Ursons are in the wrong and turn against them to help the Tlak’khan farmers.

The team returns to Earth with a piece of technology that allows them to see alien creatures everywhere, and must attempt to contain the problem when it spreads beyond the base.